References

Andersson A-C, Alstrom-Rapaport C, Fredga K (2005) Lack of mitochondrial DNA divergence between chromosome races of the common shrew, Sorex araneus, in Sweden. Implications for interpreting chromosomal evolution and colonization history. Mol Ecol 14:2703-2716 Avise JC (2000) Phylogeography: the history and formation of species. Havard University Press, Cambridge, MA

Ballard JWO, Whitlock MC (2004) The incomplete natural history of mitochondria. Mol Ecol 13:729-744

Balloux F, Brünner H, Lugon-Moulin N, Hausser J, Goudet J (2000) Microsatellites can be misleading: an empirical and simulation study. Evolution 54:1414-1422 Bandelt HJ, Forster P, Röhl A (1999) Median-joining networks for inferring intraspecific phy-

logenies. Mol Biol Evol 16:37-48 Basset P, Yannic G, Hausser J (2006) Genetic and karyotypic structure in the shrews of the Sorex araneus group: are they independent? Mol Ecol 15:1577-1587 Bhagwat SA, Willis KJ (2008) Species persistence in Northerly glacial refugia of Europe: a matter of chance or biogeographical traits? J Biogeogr 35:464-482 Bilton DT, Mirol PM, Mascheretti S, Fredga K, Zima J, Searle JB (1998) Mediterranean Europe as an area of endemism for small mammals rather than a source of northwards postglacial colonization. Proc R Soc Lond Ser B 265:1219-1226 Brändli L, Handley LJ, Vogel P, Perrin N (2005) Evolutionary history of the greater white-toothed shrew (Crocidura russula) inferred from analysis of mtDNA, Y and X chromosome markers. Mol Phylogenet Evol 37:832-844 Brown WM, George M, Wilson AC (1979) Rapid evolution of animal mitochondrial DNA. Proc

Natl Acad Sci USA 76:1967-1971 Brunhoff C, Galbreath KE, Federov VB, Cook JA, Jaarola M (2003) Holarctic phylogeography of the root vole (Microtus oeconomus): implications for late Quaternary biogeography of high altitudes. Mol Ecol 12:957-968 Brunhoff C, Yoccoz NG, Ims RA, Jaarola M (2006) Glacial survival or late glacial colonization? Phylogeography of the root vole (Microtus oeconomus) in North-West Norway. J Biogeogr 33:2136-2144

Churchfield S, Searle JB (2008) Pygmy shrew. In: Harris S, Yalden DW (eds) Mammals of the

British Isles Handbook. 4th edition. The Mammal Society, London. pp. 267-271 Deffontaine V, Libois R, Kotlik P, Sommer R, Nieberding C, Paradis E, Searle JB, Michaux JR (2005) Beyond the Mediterranean peninsulas: evidence of central European glacial refugia for a temperate forest mammal species, the bank vole (Clethrionomys glareolus). Mol Ecol 14:1727-1739 Excoffier L, Laval G, Schneider S (2005) Arlequin ver. 3.0: an integrated software package for population genetic data analysis. Evol Bioinform Online 1:2611-2620 Fontanillas P, Depraz A, Giorgi MS, Perrin N (2005) Nonshivering thermogenesis capacity associated to mitochondrial haplotypes and gender in the greater white-toothed shrew, Crocidura russula. Mol Ecol 14:661-670

Fu Y-X (1997) Statistical tests of neutrality of mutations against population growth, hitchhinking and background selection. Genetics 147:915-925 Fumagalli L, Taberlet P, Favre L, Hausser J (1996) Origin and evolution of homologous repeated sequences in the mitochondrial DNA control region of shrews. Mol Biol Evol 13:31-46

Greenwood PJ (1980) Mating systems, philopatry and dispersal in birds and mammals. Anim Behav 28:1140-1162

Gündüz I, Jaarola M, Tez C, Yeniyurt C, Polly PD, Searle JB (2007) Multigenic and morphometric differentiation of ground squirrels (Spermophilus, Scuiridae, Rodentia) in Turkey, with a description of a new species. Mol Phylogenet Evol 43:916-935 Hammer MF, Blackmer F, Garrigan D, Nachmann MW, Wilder JA (2003) Human population structure and its effects on sampling Y chromosome sequence variation. Genetics 164:1495-1509 Hasegawa M, Kishino K, Yano T (1985) Dating the human-ape splitting by a molecular clock of mitochondrial DNA. J Mol Evol 22:160-174 Heckel G, Burri R, Fink S, Desmet J-F, Excoffier L (2005) Genetic structure and colonization processes in European populations of the common vole, Microtus arvalis. Evolution 59:2231-2242 Hellborg L, Ellegren H (2003) Y chromosome conserved anchored tagged sequences (YCATS)

for the analysis of mammalian male-specific DNA. Mol Ecol 12:283-291 Hellborg L, Ellegren H (2004) Low levels of nucleotide diversity in mammalian Y chromosomes.

Mol Biol Evol 21:158-163 Hellborg L, Gündüz I, Jaarola M (2005) Analysis of sex-linked sequences supports a new mammal species in Europe. Mol Ecol 14:2025-2031 Hewitt GM (1999) Post-glacial re-colonization of European biota. Biol J Linn Soc 68:87-112 Hewitt GM (2000) The genetic legacy of the Quaternary ice ages. Nature 405:907-913 Hofreiter M, Serre D, Rohland N, Rabeder G, Nagel D, Conard N, Munzel S, Pääbo S (2004) Lack of phylogeography in European mammals before the last glaciation. Proc Natl Acad Sci USA 101:12963-12968

Irwin DM, Kocher TD, Wilson AC (1991) Evolution of the cytochrome b gene of mammals. J Mol Evol 32:128-144

Jaarola M, Tegelström H, Fredga K (1997) A contact zone with noncoincident clines for sex-

specific markers in the field vole (Microtus agrestis). Evolution 51:241-249 Jaarola M, Searle JB (2002) Phylogeography of field voles (Microtus agrestis) in Eurasia inferred from mitochondrial DNA sequences. Mol Ecol 11:2613-2621 Jaarola M, Searle JB (2004) A highly divergent mitochondrial DNA lineage of Microtus agrestis in Southern Europe. Heredity 92:228-234 Kimura M (1980) A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16:111-120 Kocher TD, Thomas WK, Meyer A, Edwards SV, Pääbo S, Villablanca FX, Wilson AC (1989) Dynamics of mitochondrial DNA evolution in animals: amplification and sequencing with conserved primers. Proc Natl Acad Sci USA 86:6196-6200 Kotlik P, Deffontaine V, Mascheretti S, Zima J, Michaux JR, Searle JB (2006) A Northern glacial refu-

gium for bank voles (Clethrionomys glareolus). Proc Natl Acad Sci USA 103:14860-14864 Kumar S, Tamura K, Nei M (2004) MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 5:150-163 Mascheretti S, Rogatcheva MB, Gündüz I, Fredga K, Searle JB (2003) How did pygmy shrews colonize Ireland? Clues from a phylogenetic analysis of mitochondrial cytochrome b sequences. Proc R Soc Lond Ser B 270:1593-1599 McDevitt AD, Rambau RV, O'Brien J, McDevitt CD, Hayden TJ, Searle JB (2009) Genetic variation in Irish pygmy shrews Sorex minutus (Soricomorpha: Soricidae): implications for colonization history. Biol J Linn Soc 97:918-927 Melo-Ferreira J, Boursot P, Suchentrunk F, Ferrand N, Alves PC (2005) Invasion from the cold past: extensive introgression of mountain hare (Lepus timidus) mitochondrial DNA into three other hare species in Northern Iberia. Mol Ecol 14:2459-2464 Michaux JR, Magnanou E, Paradis E, Nieberding C, Libois R (2003) Mitochondrial phylogeog-raphy of the woodmouse (Apodemus sylvaticus) in the Western Palearctic region. Mol Ecol 12:685-697

Mishmar D, Ruiz-Pensini E, Golik P et al (2003) Natural selection shaped regional mtDNA variation in humans. Proc Natl Acad Sci USA 100:171-176

Mitchell-Jones AJ, Amori G, Bogdanowicz W et al (1999) The atlas of European mammals. Poyser, London

Mix AC, Bard E, Schneider R (2001) Environmental processes of the ice age: land, oceans, glaciers (EPILOG). Quaternary Sci Rev 20:627-657 Nishimura Y, Yoshinari T, Naruse K, Yamada T, Sumi K, Mitani H, Higashiyama T, Kuroiwa T (2006) Active digestion of sperm mitochondrial DNA in single living sperm revealed by optical tweezers. Proc Natl Acad Sci USA 103:1382-1387 Pazonyi P (2004) Mammalian ecosystem dynamics in the carpathian basin during the last 27,

000 years. Palaeogeogr Palaeoclimatol Palaeoecol 212:295-314 Pesole G, Gissi C, De Chirico A, Saccone C (1999) Nucleotide substitution rate of mammalian mitochondrial genomes. J Mol Evol 48:427-434 Petit E, Balloux F, Excoffier L (2002) Mammalian population genetics: why not Y? Trends Ecol Evol 17:28-33

Pokines JT (2000) Microfaunal research design in the cantabrian Spanish paleolithic. J Anthropol Res 56:95-111

Posada D, Crandall KA (1998) MODELTEST: testing the model of DNA substitution.

Bioinformatics 14:817-818 Rambaut A (1996) Se-Al, sequence alignment editor (version 2.0). Department of Zoology,

University of Oxford. [http://evolve.zoo.ox.ac.uk] Renssen H, Vandenberghe J (2003) Investigation of the relationship between permafrost distribution in NW Europe and extensive winter sea-ice cover in the North Atlantic Ocean during the cold phases of the Last Glaciation. Quat Sci Rev 22:209-223 Rhymer JD, Barbay JM, Givens HL (2004) Taxonomic relationship between Sorex dispar and

S. gaspensis: inferences from mitochondrial DNA sequences. J Mammal 85:331-337 Roca AL, Georgiadis N, O'Brien SJ (2005) Cytonuclear genomic dissociation in African elephant species. Nat Genet 37:96-100 Rogers AR (1995) Genetic evidence for a pleistocene population explosion. Evolution 49:608-615 Rogers AR, Harpending H (1992) Population-growth makes waves in the distribution of pairwise genetic distances. Mol Biol Evol 9:552-569 Ronquist F, Huelsenbeck JP (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19:1572-1574 Rozas J, Sanchez-DelBarrio JC, Messeguer X, Rozas R (2003) DnaSP, DNA polymorphism analysis by coalescent and other methods. Bioinformatics 19:2496-2497 Rzebik-Kowalska B (1998) Fossil history of shrews in Europe. In: Wojcik JM, Wolsan M (eds) Evolution of shrews. Mammal Research Institute, Polish Academy of Sciences, Bialowieza, pp 23-92 Saarma U, Ho SYW, Pybus OG et al (2007) Mitogenetic structure of brown bears (Ursus arctos L.) in Northeastern Europe and a new time frame for the formation of European brown bear lineages. Mol Ecol 16:401-413 Schneider S, Excoffier L (1999) Estimation of demographic parameters from the distribution of pairwise differences when the mutation rates vary among sites: application to human mito-chondrial DNA. Genetics 152:1079-1089 Seddon JM, Santucci F, Reeve NJ, Hewitt GM (2001) DNA footprints of European hedgehogs, Erinaceus europaeus and E. concolor: pleistocene refugia, potglacial expansion and colonization routes. Mol Ecol 10:2187-2198 Sommer RS, Nadachowski A (2006) Glacial refugia of mammals in Europe: evidence from fossil records. Mammal Rev 36:251-265 Stewart DT, Baker AJ (1994a) Patterns of sequence variation in the mitochondrial D-loop region of shrews. Mol Biol Evol 11:9-21 Stewart DT, Baker AJ (1994b) Evolution of mtDNA D-loop sequences and their use in phyloge-netic studies of shrews in the subgenus Otisorex (Sorex: Soricidae: Insectivora). Mol Phylogenet Evol 3:38-46 Stewart DT, Baker AJ (1997) A phylogeny of some taxa of masked shrews (Sorex cinereus) based on mitochondrial-DNA, D-loop sequences. J Mammal 78:361-376

Stewart JR, Lister AM (2001) Cryptic Northern refugia and the origins of modern biota. Trends Ecol Evol 16:608-613

Swofford DL (1998) PAUP*. Phylogenetic Analysis Using Parsimony (*and other methods).

Version 4.0b10. Sinauer Associates, Sunderland, MA Taberlet P, Fumagalli L, Wust-Saucy A-G, Cosson J-F (1998) Comparative phylogeography and post-glacial colonization routes in Europe. Mol Ecol 7:453-464 Templeton AR (2002) Out of Africa again and again. Nature 416:45-51

Underhill PA, Shen P, Lin AA et al (2000) Y chromosome sequence variation and the history of human populations. Nat Genet 26:358-361 Xia X, Xie Z (2001) DAMBE: data analysis in molecular biology and evolution. J Heredity 92:371-373

Part IV

Relicts Since Postglacial Times

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