Appleton, B. A., Y. N. Zhang, P. Wu, J. P. Yin, W. Hunziker, et al. 2006. "Comparative structural analysis of the Erbin PDZ domain and the first PDZ domain of ZO-1—Insights into determinants of PDZ domain specificity." J Biol Chem 281: 22312-20. Avrantinis, S. K., R. L. Stafford, X. Tian and G. A. Weiss. 2002. "Dissecting the streptavidin-biotin interaction by phage-displayed shotgun scanning." Chem Bio Chem 3: 1229-34. Avrantinis, S. K. and G. A. Weiss (2005). Mapping protein functional epitopes. Phage display in biotechnology and drug discovery. S. S. Sidhu. Boca Raton, CRC Press. 3: 441-60. Bader, S., S. Kühner and A. C. Gavin. 2008. "Interaction networks for systems biology." FEBS Lett 582: 1220-24.

Barbas, C. F., III, D. R. Burton, J. K. Scott and G. J. Silverman. 2001. "Phage display: A laboratory manual." Phage display: A laboratory manual, i-xvi, 1.1-23.32, A1.1-A6.3, I.1-I.22. Barbas, C. F., A. S. Kang, R. A. Lerner and S. J. Benkovic. 1991. "Assembly of the combinatorial antibody libraries on phage surfaces—The gene-III site." Proc Natl Acad Sci U S A 88: 7978-82.

Barthelemy, P. A., H. Raab, B. A. Appleton, C. J. Bond, P. Wu, et al. 2008. "Comprehensive analysis of the factors contributing to the stability and solubility of autonomous human V-H domains." J Biol Chem 283: 3639-54.

Bass, S., R. Greene and J. A. Wells. 1990. "Hormone phage—an enrichment method for a variant proteins with altered binding-properties." Proteins 8: 309-14.

Beste, G., F. S. Schmidt, T. Stibora and A. Skerra. 1999. "Small antibody-like proteins with prescribed ligand specificities derived from the lipocalin fold." Proc Natl Acad Sci U S A 96: 1898-1903.

Binz, H. K., P. Amstutz, A. Kohl, M. T. Stumpp, C. Briand, et al. 2004. "High-affinity binders selected from designed ankyrin repeat protein libraries." Nat Biotechnol 22: 575-82.

Binz, H. K., P. Amstutz and A. Pluckthun. 2005. "Engineering novel binding proteins from nonimmunoglobulin domains." Nat Biotechnol 23: 1257-68.

Bond, C. J., J. C. Marsters and S. S. Sidhu. 2003. "Contributions of CDR3 to VHH domain stability and the design of monobody scaffolds for naive antibody libraries." J Mol Biol 332: 643-55.

Bond, C. J., C. Wiesmann, J. C. Marsters and S. S. Sidhu. 2005. "A structure-based database of antibody variable domain diversity." J Mol Biol 348: 699-709.

Borg, J. P., S. Marchetto, A. Le Bivic, V. Ollendorff, F. Jaulin-Bastard, et al. 2000. "ERBIN: a basolateral PDZ protein that interacts with the mammalian ERBB2/HER2 receptor." Nat Cell Biol 2: 407-14.

Cesareni, G., A. Ceol, C. Gavrila, L. M. Palazzi, M. Persico, et al. 2005. "Comparative inter-actomics." FEBS Lett 579: 1828-33.

Cestra, G., L. Castagnoli, L. Dente, O. Minenkova, A. Petrelli, et al. 1999. "The SH3 domains of endophilin and amphiphysin bind to the proline-rich region of synaptojanin 1 at distinct sites that display an unconventional binding specificity." J Biol Chem 274: 32001-7.

Chappel, J. A., M. He and A. S. Kang. 1998. "Modulation of antibody display on M13 filamentous phage." J Immunol Methods 221: 25-34.

Crameri, R., S. Hemmann and K. Blaser. 1996. "pJuFo: A phagemid for display of cDNA libraries on phage surface suitable for selective isolation of clones expressing allergens." Adv Exp Med Biol 409: 103-10.

Crameri, R., R. Jaussi, G. Menz and K. Blaser. 1994. "Display of expression products of cDNA libraries on phage surfaces—A versatile screening system for selective isolation of genes by specific gene-product ligand interaction." Eur J Biochem 226: 53-58.

Crameri, R. and R. Kodzius. 2001. "The powerful combination of phage surface display of cDNA libraries and high throughput screening." Comb Chem High Throughput Screen 4: 145-55.

Crameri, R. and M. Suter. 1993. "Display of biologically active proteins in the surface of Filamentous Phage—A cDNA cloning system for the selection of functional gene-products linked to the genetic information responsible for their production." Gene 137: 69-75.

Craven, S. E. and D. S. Bredt. 1998. "PDZ proteins organize synaptic signaling pathways." Cell 93: 495-8.

Cull, M. G. and P. J. Schatz (2000). Biotinylation of proteins in vivo and in vitro using small peptide tags. Applications of Chimeric Genes and Hybrid Proteins, Pt A. 326: 430-40.

Cwirla, S. E., E. A. Peters, R. W. Barrett and W. J. Dower. 1990. "Peptides on phage—a vast library of peptides for identifying ligands." Proc Natl Acad Sci U S A 87: 6378-82.

de Haard, H. J., N. van Neer, A. Reurs, S. E. Hufton, R. C. Roovers, et al. 1999. 'A large non-immunized human Fab fragment phage library that permits rapid isolation and kinetic analysis of high affinity antibodies." J Biol Chem 274: 18218-30.

DeLisa, M. P., D. Tullman and G. Georgiou. 2003. "Folding quality control in the export of proteins by the bacterial twin-arginine translocation pathway." Proc Natl Acad Sci U S A 100: 6115-20.

Dennis, M. S. and R. A. Lazarus. 1994. "Kunitz domain inhibitors of tissue factor-factor VIIA. 1. Potent inhibitors selected from libraries by phage display." J Biol Chem 269: 22129-36.

Deshayes, K., M. L. Schaffer, N. J. Skelton, G. R. Nakamura, S. Kadkhodayan, et al. 2002. "Rapid identification of small binding motifs with high-throughput phage display: Discovery of peptidic antagonists of IGF-1 function." Chem Biol 9: 495-505.

Devlin, J. J., L. C. Panganiban and P. E. Devlin. 1990. "Random peptide libraries—a source of specific protein-binding molecules." Science 249: 404-6.

Dunn, I. S. 1996. "Phage display of proteins." Curr Opin Biotechnol 7: 547-53.

Eigenbrot, C., D. Kirchhofer, M. S. Dennis, L. Santell, R. A. Lazarus, et al. 2001. "The factor VII zymogen structure reveals re-registration of beta strands during activation." Structure 9: 627-36.

Engel, M. F. M., C. P. M. van Mierlo and A. Visser. 2002. "Kinetic and structural characterization of adsorption-induced unfolding of bovine alpha-lactalbumin." J Biol Chem 277: 10922-30.

Engel, M. F. M., A. Visser and C. P. M. van Mierlo. 2004. "Conformation and orientation of a protein folding intermediate trapped by adsorption." Proc Natl Acad Sci U S A 101: 11316-21.

Fanning, A. S. and J. M. Anderson. 1999. "Protein modules as organizers of membrane structure." Curr Opin Cell Biol 11: 432-9.

Felici, F., L. Castagnoli, A. Musacchio, R. Jappelli and G. Cesareni. 1991. "Selection of antibody ligands form a large library of oligopeptides expressed on multivalent exposition vector." J Mol Biol 222: 301-10.

Fellouse, F. A., P. A. Barthelemy, R. F. Kelley and S. S. Sidhu. 2006. "Tyrosine plays a dominant functional role in the paratope of a synthetic antibody derived from a four amino acid code." J Mol Biol 357: 100-14.

Fellouse, F. A., K. Esaki, S. Birtalan, D. Raptis, V. J. Cancasci, et al. 2007. "High-throughput generation of synthetic antibodies from highly functional minimalist phage-displayed libraries." J Mol Biol 373: 924-40.

Fellouse, F. A., C. Wiesmann and S. S. Sidhu. 2004. "Synthetic antibodies from a four-amino-acid code: A dominant role for tyrosine in antigen recognition." Proc Natl Acad Sci U S A 101: 12467-72.

Feng, J. N., M. Russel and P. Model. 1997. "A permeabilized cell system that assembles filamentous bacteriophage." Proc Natl Acad Sci U S A 94: 4068-73.

Feng, S. B., J. K. Chen, H. T. Yu, J. A. Simon and S. L. Schreiber. 1994. "2 Binding orientations for peptides to the Src SH3 domain—development of a general-model for SH3-ligand interactions." Science 266: 1241-7.

Fuh, G. and S. S. Sidhu. 2000. "Efficient phage display of polypeptides fused to the carboxy-terminus of the M13 gene-3 minor coat protein." FEBS Lett 480: 231-4.

Gai, S. A. and K. D. Wittrup. 2007. "Yeast surface display for protein engineering and characterization." Curr Opin Struct Biol 17: 467-73.

Gao, C. S., S. L. Mao, G. Kaufmann, P. Wirsching, R. A. Lerner, et al. 2002. "A method for the generation of combinatorial antibody libraries using pIX phage display." Proc Natl Acad Sci U S A 99: 12612-16.

Gao, C. S., S. L. Mao, C. H. L. Lo, P. Wirsching, R. A. Lerner, et al. 1999. "Making artificial antibodies: A format for phage display of combinatorial heterodimeric arrays." Proc Natl Acad Sci U S A 96: 6025-30.

Georgiou, G., C. Stathopoulos, P. S. Daugherty, A. R. Nayak, B. L. Iverson, et al. 1997. "Display of heterologous proteins on the surface of microorganisms: From the screening of combinatorial libraries to live recombinant vaccines." Nat Biotechnol 15: 29-34.

Graille, M., E. A. Stura, A. L. Corper, B. J. Sutton, M. J. Taussig, et al. 2000. "Crystal structure of a Staphylococcus aureus protein A domain complexed with the Fab fragment of a human IgM antibody: Structural basis for recognition of B-cell receptors and superantigen activity." Proc Natl Acad Sci U S A 97: 5399-5404.

Gray, J. J. 2004. "The interaction of proteins with solid surfaces." Curr Opin Struct Biol 14: 110-15.

Greenwood, J., A. E. Willis and R. N. Perham. 1991. "Multiple display of foreign peptides on a filamentous bacteriophage—peptides from Plasmodium-Falciparum circumsporozoite proteins as antigens." J Mol Biol 220: 821-7.

Han, Z., E. Karatan and B. Kay (2005). Mapping intracellular protein networks. Phage Display in Biotechnology and Drug Discovery. S. Sidhu, CRC: 322-46.

Hanes, J., L. Jermutus, S. Weber-Bornhauser, H. R. Bosshard and A. Pluckthun. 1998. "Ribosome display efficiently selects and evolves high-affinity antibodies in vitro from immune libraries." Proc Natl Acad Sci U S A 95: 14130-5.

Hanes, J. and A. Pluckthun. 1997. "In vitro selection and evolution of functional proteins by using ribosome display." Proc Natl Acad Sci U S A 94: 4937-42.

Hoet, R. M., E. H. Cohen, R. B. Kent, K. Rookey, S. Schoonbroodt, et al. 2005. "Generation of high-affinity human antibodies by combining donor-derived and synthetic complementarity-determining-region diversity." Nat Biotechnol 23: 344-8.

Huang, W. Z., M. McKevitt and T. Palzkill. 2000. "Use of the arabinose p(bad) promoter for tightly regulated display of proteins on bacteriophage." Gene 251: 187-97.

Hufton, S. E., P. T. Moerkerk, E. V. Meulemans, A. de Bruine, J. W. Arends, et al. 1999. "Phage display of cDNA repertoires: the pVI display system and its applications for the selection of immunogenic ligands." J Immunol Methods 231: 39-51.

Il'Ichev, A. A., O. O. Minenkova, S. I. Tat'Kov, N. N. Karpyshev, A. M. Eroshkin, et al. 1989. "Production of a viable variant of phage M13 with a foreign peptide inserted into the coat basic protein." Doklady Akademii Nauk SSSR 307: 481-3.

Jacobsson, K. and L. Frykberg. 2001. "Shotgun phage display cloning." Comb Chem High Throughput Screen 4: 135-43.

Jespers, L. S., J. H. Messens, A. Dekeyser, D. Eeckhout, I. Vandenbrande, et al. 1995. "Surface expression and ligand-based selection of cDNAs fused to filamentous Phage Gene VI." Bio-Technology 13: 378-82.

Jung, S., A. Honegger and A. Pluckthun. 1999. "Selection for improved protein stability by phage display." J Mol Biol 294: 163-80.

Kang, A. S., C. F. Barbas, K. D. Janda, S. J. Benkovic and R. A. Lerner. 1991. "Linkage of recognition and replication functions by assembling combinatorial antibody Fab libraries along the phage surfaces." Proc Natl Acad Sci U S A 88: 4363-6.

Knappik, A., L. M. Ge, A. Honegger, P. Pack, M. Fischer, et al. 2000. "Fully synthetic human combinatorial antibody libraries (HuCAL) based on modular consensus frameworks and CDRs randomized with trinucleotides." J Mol Biol 296: 57-86.

Kohl, A., H. K. Binz, P. Forrer, M. T. Stumpp, A. Pluckthun, et al. 2003. "Designed to be stable: Crystal structure of a consensus ankyrin repeat protein." Proc Natl Acad Sci U S A 100: 1700-05.

Koide, A., R. N. Gilbreth, K. Esaki, V. Tereshko and S. Koide. 2007. "High-affinity single-domain binding proteins with a binary-code interface." Proc Natl Acad Sci U S A 104: 6632-7.

Koide, A. and S. Koide. 2007. "Monobodies—antibody mimics based on the scaffold of the fibronectin type III domain." Methods Mol Biol 352: 95-109.

Konings, R. N. H., R. H. A. Folmer, P. J. M. Folkers, M. Nilges and C. W. Hilbers. 1995. "3-Dimensional structure of the single-stranded DNA-binding protein encoded be gene-V of the filamentous bacteriophage-M13 and a model of its complex with single-stranded DNA." Fems Microbiology Reviews 17: 57-72.

Krebber, C., S. Spada, D. Desplancq, A. Krebber, L. M. Ge, et al. 1997. "Selectively-infective phage (SIP): A mechanistic dissection of a novel in vivo selection for protein-ligand interactions." J Mol Biol 268: 607-18.

Krebs, B., R. Rauchenberger, R. Silke, C. Rothe, M. Tesar, et al. 2001. "High-throughput generation and engineering of recombinant human antibodies." J Immunol Methods 254: 67-84.

Kristensen, P. and G. Winter. 1998. "Proteolytic selection for protein folding using filamentous bacteriophages." Fold Des 3: 321-8.

Landgraf, C., S. Panni, L. Montecchi-Palazzi, L. Castagnoli, J. Schneider-Mergener, et al. 2004. "Protein interaction networks by proteome peptide scanning." PLoS Biol 2: 94-103.

Laura, R. P., A. S. Witt, H. A. Held, R. Gerstner, K. Deshayes, et al. 2002. "The Erbin PDZ domain binds with high affinity and specificity to the carboxyl termini of delta-catenin and ARVCF." J Biol Chem 277: 12906-14.

Lee, C. V., S. G. Hymowitz, H. J. A. Wallweber, N. C. Gordon, K. L. Billeci, et al. 2006. "Synthetic anti-BR3 antibodies that mimic BAFF binding and target both human and murine B cells." Blood 108: 3103-11.

Lendel, C., J. Dogan and T. Hard. 2006. "Structural basis for molecular recognition in an Affibody: Affibody complex." J Mol Biol 359: 1293-1304.

Ley, A. C., W. Markland and R. C. Ladner. 1996. "Obtaining a family of high-affinity, high-specificity protein inhibitors of plasmin and plasma kallikrein." Mol Divers 2: 119-24.

Livnah, O., E. A. Stura, D. L. Johnson, S. A. Middleton, L. S. Mulcahy, et al. 1996. "Functional mimicry of a protein hormone by a peptide agonist: The EPO receptor complex at 2.8 angstrom." Science 273: 464-71.

Lowman, H. B. 1997. "Bacteriophage display and discovery of peptide leads for drug development." Annual Rev Biophys Biomol Struct 26: 401-24.

Lowman, H. B., S. H. Bass, N. Simpson and J. A. Wells. 1991. "Selecting high-affinity binding-proteins by monovalent phage display." Biochemistry 30: 10832-8.

Lubkowski, J., F. Hennecke, A. Plückthun and A. Wlodawer. 1998. "The structural basis of phage display elucidated by the crystal structure of the N-terminal domains of g3p." Nat Struct Biol 5: 140-47.

Lubkowski, J., F. Hennecke, A. Plückthun and A. Wlodawer. 1999. "Filamentous phage infection: crystal structure of g3p in complex with its coreceptor, the C-terminal domain of TolA." Structure 7: 711-22.

Macias, M. J., S. Wiesner and M. Sudol. 2002. "WW and SH3 domains, two different scaffolds to recognize proline-rich ligands." FEBS Lett 513: 30-37.

Marciano, D. K., M. Russel and S. M. Simon. 1999. "An aqueous channel for filamentous phage export." Science 284: 1516-9.

Marciano, D. K., M. Russel and S. M. Simon. 2001. "Assembling filamentous phage occlude pIV channels." Proc Natl Acad Sci U S A 98: 9359-64.

Marvin, D. A. 1998. "Filamentous phage structure, infection and assembly." Curr Opin Struct Biol 8: 150-8.

Mongiovi, A. M., P. R. Romano, S. Panni, M. Mendoza, W. T. Wong, et al. 1999. "A novel peptide-SH3 interaction." EMBO J 18: 5300-9.

Mori, T. 2004. "Cancer-specific ligands identified from screening of peptide-display libraries." Curr Pharm Des 10: 2335-43.

Morrison, K. L. and G. A. Weiss. 2001. "Combinatorial alanine-scanning." Curr Opin Chem Biol 5: 302-7.

Murase, K., K. L. Morrison, P. Y. Tam, R. L. Stafford, F. Jurnak, et al. 2003. "EF-Tu binding peptides indentified, dissected, and affinity optimized by phage display." Chem Biol 10: 161-8.

Nakamura, M., K. Tsumoto, I. Kumagai and K. Ishimura. 2003. "A morphologic study of filamentous phage infection of Escherichia coli using biotinylated phages." FEBS Lett 536: 167-72.

Neduva, V. and R. B. Russell. 2006. "Peptides mediating interaction networks: New leads at last." Curr Opin Biotechnol 17: 465-71.

Opalka, N., R. Beckmann, N. Boisset, M. N. Simon, M. Russel, et al. 2003. "Structure of the filamentous phage pIV multimer by cryo-electron microscopy." J Mol Biol 325: 461-70.

Pal, G., S. Y. Fong, A. A. Kossiakoff and S. S. Sidhu. 2005. "Alternative views of functional protein binding epitopes obtained by combinatorial shotgun scanning mutagenesis." Protein Sci 14: 2405-13.

Pal, G., J.-L. K. Kouadio, D. R. Artis, A. A. Kossiakoff and S. S. Sidhu. 2006. "Comprehensive and quantitative mapping of energy landscapes for protein-protein interactions by rapid combinatorial scanning." J Biol Chem 281: 22378-85.

Palzkill, T., W. Z. Huang and G. M. Weinstock. 1998. "Mapping protein-ligand interactions using whole genome phage display libraries." Gene 221: 79-83.

Paschke, M. and W. Hohne. 2005. "A twin-arginine translocation (Tat)-mediated phage display system." Gene 350: 79-88.

Pawson, T. and P. Nash. 2003. "Assembly of cell regulatory systems through protein interaction domains." Science 300: 445-2.

Phillips, K. J., D. M. Rosenbaum and D. R. Liu. 2006. "Binding and stability determinants of the PPARy nuclear receptor-coactivator interface as revealed by shotgun alanine scanning and in vivo selection." J Am Chem Soc 128: 11298-306.

Pires, J. R., F. Taha-Nejad, F. Toepert, T. Ast, U. Hoffmuller, et al. 2001. "Solution structures of the YAP65 WW domain and the variant L30 K in complex with the peptides GTPPPPYTVG, N-(n-octyl)-GPPPY and PLPPY and the application of peptide libraries reveal a minimal binding epitope." J Mol Biol 314: 1147-56.

Possee, R. D. 1997. "Baculoviruses as expression vectors." Curr Opin Biotechnol 8: 569-72.

Rakonjac, J. and P. Model. 1998. "Roles of pill in filamentous phage assembly." J Mol Biol 282: 25-41.

Ren, Z. J. and L. W. Black. 1998. "Phage T4 SOC and HOC display of biologically active, full-length proteins on the viral capsid." Gene 215: 439-44.

Rhyner, C., R. Kodzius and R. Crameri. 2002. "Direct selection of cDNAs from filamentous phage surface display libraries: Potential and limitations." Curr Pharm Biotechnol 3: 13-21.

Rickles, R. J., M. C. Botfield, Z. G. Weng, J. A. Taylor, O. M. Green, et al. 1994. "Identification of Src, Fyn, Lyn, PI3K and Abl SH3-domain ligands using phage display libraries." EMBO J 13: 5598-5604.

Rickles, R. J., M. C. Botfield, X. M. Zhou, P. A. Henry, J. S. Brugge, et al. 1995. "Phage display selection of ligand residues important for Src-homology-3 domain binding-specificity." Proc Natl Acad Sci U S A 92: 10909-13.

Riechmann, L. and P. Holliger. 1997. "The C-terminal domain of ToIA is the coreceptor for filamentous phage infection of E-coli." Cell 90: 351-60.

Roberts, B. L., W. Markland, K. Siranosian, M. J. Saxena, S. K. Guterman, et al. 1992. "Protease inhibitor display M13-phage—Selection of high-affinity neutrophil elastase inhibitors." Gene 121: 9-15.

Roth, T. A., G. A. Weiss, C. Eigenbrot and S. S. Sidhu. 2002. "A minimized M13 coat protein defines the requirements for assembly into the bacteriophage particle." J Mol Biol 322: 357-67.

Röthlisberger, D., K. M. Pos and A. Plückthun. 2004. "An antibody library for stabilizing and crystallizing membrane proteins—selecting binders to the citrate carrier CitS." FEBS Lett 564: 340-8.

Runyon, S. T., Y. G. Zhang, B. A. Appleton, S. L. Sazinsky, P. Wu, et al. 2007. "Structural and functional analysis of the PDZ domains of human HtrA1 and HtrA3." Protein Sci 16: 2454-71.

Russel, M., H. Whirlow, T. P. Sun and R. E. Webster. 1988. "Low-Frequency of infection of the F-bacteria by transducing particles of filamentous bacteriophages." J Bacteriol 170: 5312-6.

Santini, C., D. Brennan, C. Mennuni, R. H. Hoess, A. Nicosia, et al. 1998. "Efficient display of an HCV cDNA expression library as C-terminal fusion to the capsid protein D of bacteriophage lambda." J Mol Biol 282: 125-35.

Sato, K., M. D. Simon, A. M. Levin, K. M. Shokat and G. A. Weiss. 2004. "Dissecting the engrailed homedomain-DNA interaction by phage-displayed shotgun scanning." Chem Biol 11: 1017-23.

Schaffer, M. L., K. Deshayes, G. Nakamura, S. Sidhu and N. J. Skelton. 2003. "Complex with a phage display-derived peptide provides insight into the function of insulin-like growth factor I." Biochemistry 42: 9324-34.

Schlehuber, S., G. Beste and A. Skerra. 2000. "A novel type of receptor protein, based on the lipocalin scaffold, with specificity for digoxigenin." J Mol Biol 297: 1105-20.

Scott, J. K. and G. P. Smith. 1990. "Searching for peptide ligands with an epitope library." Science 249: 386-90.

Sheets, M. D., P. Amersdorfer, R. Finnern, P. Sargent, E. Lindqvist, et al. 1998. "Efficient construction of a large nonimmune phage antibody library: The production of high-affinity human single-chain antibodies to protein antigens." Proc Natl Acad Sci U S A 95: 6157-62.

Sidhu, S. S., G. D. Bader and C. Boone. 2003a. "Functional genomics of intracellular peptide recognition domains with combinatorial biology methods." Curr Opin Chem Biol 7: 97-102.

Sidhu, S. S., W. J. Fairbrother and K. Deshayes. 2003b. "Exploring protein-protein interactions with phage display." Chembiochem 4: 14-25.

Sidhu, S. S. and F. A. Fellouse. 2006. "Synthetic therapeutic antibodies." Nat Chem Biol 2: 682-8.

Sidhu, S. S. and S. Koide. 2007. "Phage display for engineering and analyzing protein interaction interfaces." Curr Opin Struct Biol 17: 481-7.

Sidhu, S. S., H. B. Lowman, B. C. Cunningham and J. A. Wells. 2000. "Phage display for selection of novel binding peptides." Applications of Chimeric Genes and Hybrid Proteins, Pt C. 328: 333-63.

Simmons, L. C., D. Reilly, L. Klimowski, T. S. Raju, G. Meng, et al. 2002. "Expression of full-length immunoglobulins in Escherichia coli: rapid and efficient production of agly-cosylated antibodies." J Immunol Methods 263: 133-47.

Skelton, N. J., M. F. T. Koehler, K. Zobel, W. L. Wong, S. Yeh, et al. 2003. "Origins of PDZ domain ligand specificity: Structure determination and mutagenesis of the Erbin PDZ domain." J Biol Chem 278: 7645-54.

Skerra, A. 2000. "Engineered protein scaffolds for molecular recognition." J Mol Recognit 13: 167-87.

Skerra, A. 2007. "Alternative non-antibody scaffolds for molecular recognition." Curr Opin Biotechnol 18: 295-304.

Smith, G. P. 1985. "Filementous fusion phage—novel expression vectors that display cloned antigens on the virion surface." Science 228: 1315-7.

Smith, G. P. 1993. "Surface display and peptide libraries." Gene 128: 1-2.

Sparks, A. B., J. E. Rider, N. G. Hoffman, D. M. Fowlkes, L. A. Quilliam, et al. 1996. "Distinct ligand preferences of Src homology 3 domains from Src, Yes, Abl, Cortactin, p53bp2, PLC gamma, Crk, and Grb2." Proc Natl Acad Sci U S A 93: 1540-4.

Steiner, D., P. Forrer, M. T. Stumpp and A. Pluckthun. 2006. "Signal sequences directing cotranslational translocation expand the range of proteins amenable to phage display." Nat Biotechnol 24: 823-31.

Szardenings, M. 2003. "Phage display of random peptide libraries: Applications, limits, and potential." JRecept Signal Transduct Res 23: 307-49.

Thammawong, P., W. Kasinrerk, R. J. Turner and C. Tayapiwatana. 2006. "Twin-arginine signal peptide attributes effective display of CD147 to filamentous phage." Appl Microbiol Biotechnol 69: 697-703.

Tong, A. H. Y., B. Drees, G. Nardelli, G. D. Bader, B. Brannetti, et al. 2002. "A combined experimental and computational strategy to define protein interaction networks for pep-tide recognition modules." Science 295: 321-4.

Tonikian, R., Y. N. Zhang, S. L. Sazinsky, B. Currell, J. H. Yeh, et al. 2008. "A specificity map for the PDZ domain family." Plos Biology 6(9): 2043-2059.

Uchiyama, F., Y. Tanaka, Y. Minari and N. Toku. 2005. "Designing scaffolds of peptides for phage display libraries." J Biosci Bioengin 99: 448-56.

Vajdos, F. F., C. W. Adams, T. N. Breece, L. G. Presta, A. M. de Vos, et al. 2002. "Comprehensive functional maps of the antigen-binding site of an anti-ErbB2 antibody obtained with shotgun scanning mutagenesis." JMol Biol 320: 415-28.

Vanwezenbeek, P., T. J. M. Hulsebos and J. G. G. Schoenmakers. 1980. "Nucleotide-sequence of the filamentous bacteriophage M13-DNA genome—comparison with phage-FD." Gene 11: 129-48.

Venter, J. C., M. D. Adams, E. W. Myers, P. W. Li, R. J. Mural, et al. 2001. "The sequence of the human genome." Science 291: 1304-51.

Waksman, G., S. E. Shoelson, N. Pant, D. Cowburn and J. Kuriyan. 1993. "Binding of a high-affinity phosphotyrosyl peptide to the SRC SH2 domain—crystal structures of the complexed and peptide-free forms." Cell 72: 779-90.

Walter, G., Z. Konthur and H. Lehrach. 2001. "High-throughput screening of surface displayed gene products." Comb Chem High Throughput Screen 4: 193-205.

Weiss, G. A., T. A. Roth, P. F. Baldi and S. S. Sidhu. 2003. "Comprehensive mutagenesis of the C-terminal domain of the M13 gene-3 minor coat protein: the requirements for assembly into the bacteriophage particle." J Mol Biol 332: 777-82.

Weiss, G. A. and S. S. Sidhu. 2000. "Design and evolution of artificial M13 coat proteins." J Mol Biol 300: 213-9.

Weiss, G. A., C. K. Watanabe, A. Zhong, A. Goddard and S. S. Sidhu. 2000. "Rapid mapping of protein functional epitopes by combinatorial alanine scanning." Proc Natl Acad Sci U S A 97: 8950-4.

Wiesmann, C., H. W. Christinger, A. G. Cochran, B. C. Cunningham, W. J. Fairbrother, et al. 1998. "Crystal structure of the complex between VEGF and a receptor-blocking pep-tide." Biochemistry 37: 17765-72.

Winter, G. and C. Milstein. 1991. "Man-made antibodies." Nature 349: 293-9.

Zhang, Y. N., B. A. Appleton, P. Wu, C. Wiesmann and S. S. Sidhu. 2007. "Structural and functional analysis of the ligand specificity of the HtrA2/Omi PDZ domain." Protein Sci 16: 1738-50.

Zhang, Y. N., S. Yeh, B. A. Appleton, H. A. Held, P. J. Kausalya, et al. 2006. "Convergent and divergent ligand specificity among PDZ domains of the LAP and zonula occludens (ZO) families." J Biol Chem 281: 22299-311.

0 0

Post a comment